Workshop SIG - Compute Resources for Life Science Research (CRLS)

Date: 15 MAR 2017 

In the Special Interest Group (SIG) Compute Resources for Life Science Research (CRLS) we shared lessons learned and best practices, and discussed requirements, used cases and models to scale out or federate compute resources and data processing workflows.

15 Mar 2017
SURF, Utrecht
Prior knowledge needed?
Meeting type

Topic: Reproducible pipelines – integration with software stack

During this SIG CRLS meeting we discussed the integration and synchronisation of software stacks with automatic pipeline deployment. Several speakers presented solutions that are being used in their departments, including solutions for HPC environments, and shared their experience.

More information on the SIG CRLS


09.00 - 09.30 hrs Registration & Coffee
09.30 - 09.45 hrs Welcome and introduction, Irene Nooren (SURFsara) & Patrick Kemmeren (Princes Maxima Centrum)
09.45 - 10.15 hrs NFU Data4Lifesciences WP7 status update, Irene Nooren
10.15 - 11.00 hrs Autodeployment of reproducible BBMRI-NL WGS and RNAseq analysis pipelines with Ansible, BioConda and EasyBuild, Leon Mei (LUMC)
11.00 - 11.15 hrs Coffee break
11.15 - 12.00 hrs Deploying software with GNU Guix on a multi-user HPC environment, Roel Janssen (UMCU)
12.00 - 12.45 hrs Jupyter notebooks, Machiel Jansen (SURFsara)
12.45 - 13.00 hrs Wrap up, Irene Nooren & Patrick Kemmeren
13.00 - 14.00 hrs Lunch

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For whom?

This workshop was intended for researchers, research supporters and ICT-managers.

Latest modifications 23 Mar 2017